IL_8VPK_049

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8VPK|1|A|A|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_049 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.3565

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VPK|1|A|C|1333
8VPK|1|A|C|1334
*
8VPK|1|A|G|1343
8VPK|1|A|A|1344
8VPK|1|A|G|1345

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S Ribosomal Protein L20