IL_8VPK_061

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8VPK|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_061 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.281

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VPK|1|A|U|1689
8VPK|1|A|A|1690
8VPK|1|A|A|1691
8VPK|1|A|G|1692
*
8VPK|1|A|U|1742
8VPK|1|A|G|1743
8VPK|1|A|A|1744
8VPK|1|A|U|1745
8VPK|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains