IL_8VPK_068

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_068 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0611

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|G|1884
8VPK|1|A|G|1885
8VPK|1|A|A|1886
8VPK|1|A|A|1887
8VPK|1|A|C|1888
8VPK|1|A|U|1889
8VPK|1|A|C|1890
8VPK|1|A|G|1891
8VPK|1|A|G|1892
*
8VPK|1|A|C|2214
8VPK|1|A|U|2215
8VPK|1|A|G|2216
8VPK|1|A|U|2217
8VPK|1|A|C|2218

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14