IL_8VPK_070

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8VPK|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_070 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.1102

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8VPK|1|A|C|1904
8VPK|1|A|G|1905
8VPK|1|A|U|1906
8VPK|1|A|A|1907
8VPK|1|A|A|1908
8VPK|1|A|C|1909
*
8VPK|1|A|G|1914
8VPK|1|A|G|1915
8VPK|1|A|A|1916
8VPK|1|A|G|1917
8VPK|1|A|A|1918
8VPK|1|A|A|1919
8VPK|1|A|G|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2