IL_8VPK_071

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8VPK|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_071 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.2759

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_04785.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8VPK|1|A|C|1930
8VPK|1|A|A|1931
8VPK|1|A|U|1932
8VPK|1|A|G|1933
8VPK|1|A|G|1934
*
8VPK|1|A|U|1960
8VPK|1|A|G|1961
8VPK|1|A|A|1962
8VPK|1|A|G|1963

Current chains

Chain A

23S ribosomal RNA

Nearby chains