IL_8VPK_096

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_096 not in the Motif Atlas

Geometric match to IL_5B2P_001

Geometric discrepancy: 0.1372

The information below is about IL_5B2P_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8VPK|1|A|C|2685
8VPK|1|A|U|2686
8VPK|1|A|U|2687
*
8VPK|1|A|A|2711
8VPK|1|A|U|2712
8VPK|1|A|G|2713

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L37

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16