IL_8VPK_106

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

8VPK|1|A|C|2950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_106 not in the Motif Atlas

Homologous match to IL_9DFE_103

Geometric discrepancy: 0.0987

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8VPK|1|A|C|2904
8VPK|1|A|C|2905
8VPK|1|A|U|2906
8VPK|1|A|C|2907
8VPK|1|A|U|2908
*
8VPK|1|A|A|2949
8VPK|1|A|C|2950
8VPK|1|A|G|2951

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19