IL_8VPK_109
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAUAAC*GGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8VPK|1|A|A|2989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_109 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.5722
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VPK|1|A|G|2961
8VPK|1|A|A|2962
8VPK|1|A|U|2963
8VPK|1|A|A|2964
8VPK|1|A|A|2965
8VPK|1|A|C|2966
*
8VPK|1|A|G|2986
8VPK|1|A|G|2987
8VPK|1|A|A|2988
8VPK|1|A|A|2989
8VPK|1|A|A|2990
8VPK|1|A|C|2991
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain K
- 50S Ribosomal Protein L13
- Chain f
- 50S ribosomal protein L36
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