IL_8VR4_004

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

8VR4|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_004 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.134

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VR4|1|A|G|78
8VR4|1|A|G|79
8VR4|1|A|G|80
8VR4|1|A|A|81
8VR4|1|A|G|82
*
8VR4|1|A|C|95
8VR4|1|A|G|96
8VR4|1|A|U|97
8VR4|1|A|U|98
8VR4|1|A|G|99
8VR4|1|A|A|100
8VR4|1|A|U|101
8VR4|1|A|C|102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29