IL_8VR4_045

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*UUGU

Length

7 nucleotides

Bulged bases

8VR4|1|A|U|1235, 8VR4|1|A|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_045 not in the Motif Atlas

Geometric match to IL_5Z1I_003

Geometric discrepancy: 0.3817

The information below is about IL_5Z1I_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8VR4|1|A|G|1154
8VR4|1|A|C|1155
8VR4|1|A|A|1156
*
8VR4|1|A|U|1234
8VR4|1|A|U|1235
8VR4|1|A|G|1236
8VR4|1|A|U|1237

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

Large ribosomal subunit protein uL16

Chain W

50S ribosomal protein L25