IL_8VR4_052
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VR4_052 not in the Motif Atlas
- Homologous match to IL_9DFE_048
- Geometric discrepancy: 0.0946
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8VR4|1|A|A|1377
8VR4|1|A|U|1378
8VR4|1|A|G|1379
8VR4|1|A|A|1380
8VR4|1|A|G|1381
8VR4|1|A|U|1382
8VR4|1|A|A|1383
8VR4|1|A|G|1384
*
8VR4|1|A|C|2235
8VR4|1|A|G|2236
8VR4|1|A|A|2237
8VR4|1|A|A|2238
8VR4|1|A|A|2239
8VR4|1|A|U|2240
8VR4|1|A|U|2241
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S Ribosomal Protein L4
- Chain R
- 50S Ribosomal Protein L20
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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