IL_8VR4_054

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

8VR4|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_054 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.2088

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8VR4|1|A|G|1434
8VR4|1|A|C|1435
8VR4|1|A|C|1436
8VR4|1|A|A|1437
8VR4|1|A|G|1438
*
8VR4|1|A|C|1446
8VR4|1|A|G|1447
8VR4|1|A|C|1448

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain U

50S Ribosomal Protein L23