IL_8VR4_065

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

8VR4|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_065 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2053

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VR4|1|A|G|1653
8VR4|1|A|G|1654
8VR4|1|A|A|1655
8VR4|1|A|A|1656
*
8VR4|1|A|U|1777
8VR4|1|A|A|1778
8VR4|1|A|U|1779
8VR4|1|A|G|1780
8VR4|1|A|C|1781

Current chains

Chain A

23S ribosomal RNA

Nearby chains