IL_8VR4_076

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8VR4|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_076 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.1049

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VR4|1|A|C|1904
8VR4|1|A|G|1905
8VR4|1|A|U|1906
8VR4|1|A|A|1907
8VR4|1|A|A|1908
8VR4|1|A|C|1909
*
8VR4|1|A|G|1914
8VR4|1|A|G|1915
8VR4|1|A|A|1916
8VR4|1|A|G|1917
8VR4|1|A|A|1918
8VR4|1|A|A|1919
8VR4|1|A|G|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2