IL_8VR4_077

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8VR4|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_077 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.265

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VR4|1|A|C|1930
8VR4|1|A|A|1931
8VR4|1|A|U|1932
8VR4|1|A|G|1933
8VR4|1|A|G|1934
*
8VR4|1|A|U|1960
8VR4|1|A|G|1961
8VR4|1|A|A|1962
8VR4|1|A|G|1963

Current chains

Chain A

23S ribosomal RNA

Nearby chains