IL_8VR4_089
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACG*CUAU
- Length
- 7 nucleotides
- Bulged bases
- 8VR4|1|A|C|2279, 8VR4|1|A|U|2837, 8VR4|1|A|A|2838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VR4_089 not in the Motif Atlas
- Homologous match to IL_4WF9_079
- Geometric discrepancy: 0.1021
- The information below is about IL_4WF9_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83389.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VR4|1|A|A|2278
8VR4|1|A|C|2279
8VR4|1|A|G|2280
*
8VR4|1|A|C|2836
8VR4|1|A|U|2837
8VR4|1|A|A|2838
8VR4|1|A|U|2839
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain D
- 50S ribosomal protein L3
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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