IL_8VR4_095

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUG*CCU

Length

7 nucleotides

Bulged bases

8VR4|1|A|G|2317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_095 not in the Motif Atlas

Geometric match to IL_5J7L_364

Geometric discrepancy: 0.376

The information below is about IL_5J7L_364

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8VR4|1|A|G|2316
8VR4|1|A|G|2317
8VR4|1|A|U|2318
8VR4|1|A|G|2319
*
8VR4|1|A|C|2416
8VR4|1|A|C|2417
8VR4|1|A|U|2418

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9