IL_8VR4_115
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VR4_115 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.0921
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VR4|1|A|C|2876
8VR4|1|A|U|2877
8VR4|1|A|A|2878
8VR4|1|A|G|2879
8VR4|1|A|U|2880
8VR4|1|A|A|2881
8VR4|1|A|C|2882
*
8VR4|1|A|G|2887
8VR4|1|A|G|2888
8VR4|1|A|A|2889
8VR4|1|A|C|2890
8VR4|1|A|C|2891
8VR4|1|A|G|2892
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain G
- 50S ribosomal protein L6
Coloring options: