IL_8VRL_001
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VRL_001 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.1211
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VRL|1|A|G|21
8VRL|1|A|U|22
8VRL|1|A|G|23
8VRL|1|A|G|24
8VRL|1|A|A|25
8VRL|1|A|U|26
8VRL|1|A|G|27
*
8VRL|1|A|C|597
8VRL|1|A|U|598
8VRL|1|A|G|599
8VRL|1|A|A|600
8VRL|1|A|A|601
8VRL|1|A|A|602
8VRL|1|A|C|603
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL22
- Chain b
- 50S ribosomal protein L32
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