IL_8VRL_006
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VRL_006 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.1292
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8VRL|1|A|G|187
8VRL|1|A|G|188
8VRL|1|A|A|189
8VRL|1|A|A|190
8VRL|1|A|G|191
8VRL|1|A|U|192
8VRL|1|A|G|193
*
8VRL|1|A|C|200
8VRL|1|A|U|201
8VRL|1|A|C|202
8VRL|1|A|A|203
8VRL|1|A|G|204
8VRL|1|A|U|205
8VRL|1|A|A|206
8VRL|1|A|C|207
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- Large ribosomal subunit protein bL28
- Chain e
- 50S ribosomal protein L35
Coloring options: