IL_8VRL_020
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAAGC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VRL|1|A|G|916, 8VRL|1|A|G|920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VRL_020 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1967
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VRL|1|A|G|789
8VRL|1|A|A|790
8VRL|1|A|A|791
8VRL|1|A|G|792
8VRL|1|A|C|793
*
8VRL|1|A|G|914
8VRL|1|A|U|915
8VRL|1|A|G|916
8VRL|1|A|A|917
8VRL|1|A|U|918
8VRL|1|A|A|919
8VRL|1|A|G|920
8VRL|1|A|C|921
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain M
- 50S ribosomal protein L15
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