IL_8VRL_043

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VRL|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_043 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.3525

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VRL|1|A|G|1149
8VRL|1|A|A|1150
8VRL|1|A|U|1151
8VRL|1|A|G|1152
*
8VRL|1|A|C|1239
8VRL|1|A|G|1240
8VRL|1|A|C|1241

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

Large ribosomal subunit protein uL16

Chain f

50S ribosomal protein L36