IL_8VRL_050

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8VRL|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_050 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1577

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8VRL|1|A|C|1322
8VRL|1|A|G|1323
8VRL|1|A|G|1324
8VRL|1|A|U|1325
8VRL|1|A|G|1326
8VRL|1|A|A|1327
8VRL|1|A|A|1328
8VRL|1|A|G|1329
*
8VRL|1|A|U|1349
8VRL|1|A|G|1350
8VRL|1|A|G|1351
8VRL|1|A|A|1352
8VRL|1|A|G|1353

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20