IL_8VRL_051

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8VRL|1|A|A|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_051 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.3092

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VRL|1|A|C|1333
8VRL|1|A|C|1334
*
8VRL|1|A|G|1343
8VRL|1|A|A|1344
8VRL|1|A|G|1345

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20