IL_8VRL_054

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

8VRL|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_054 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.2888

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8VRL|1|A|G|1434
8VRL|1|A|C|1435
8VRL|1|A|C|1436
8VRL|1|A|A|1437
8VRL|1|A|G|1438
*
8VRL|1|A|C|1446
8VRL|1|A|G|1447
8VRL|1|A|C|1448

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein uL23