IL_8VRL_077

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8VRL|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_077 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.2602

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_40706.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VRL|1|A|C|1930
8VRL|1|A|A|1931
8VRL|1|A|U|1932
8VRL|1|A|G|1933
8VRL|1|A|G|1934
*
8VRL|1|A|U|1960
8VRL|1|A|G|1961
8VRL|1|A|A|1962
8VRL|1|A|G|1963

Current chains

Chain A

23S ribosomal RNA

Nearby chains