IL_8VRL_084

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUAAG*UUAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_084 not in the Motif Atlas

Geometric match to IL_4V9F_057

Geometric discrepancy: 0.3522

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8VRL|1|A|G|2067
8VRL|1|A|U|2068
8VRL|1|A|U|2069
8VRL|1|A|A|2070
8VRL|1|A|A|2071
8VRL|1|A|G|2072
*
8VRL|1|A|U|2111
8VRL|1|A|U|2112
8VRL|1|A|A|2113
8VRL|1|A|A|2114
8VRL|1|A|G|2115
8VRL|1|A|C|2116

Current chains

Chain A

23S ribosomal RNA

Nearby chains