IL_8VRL_110

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8VRL|1|A|A|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_110 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1414

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

8VRL|1|A|U|2746
8VRL|1|A|G|2747
*
8VRL|1|A|C|2764
8VRL|1|A|A|2765
8VRL|1|A|A|2766
8VRL|1|A|G|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL13

Chain f

50S ribosomal protein L36