IL_8VRL_113

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_113 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1166

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VRL|1|A|C|2876
8VRL|1|A|U|2877
8VRL|1|A|A|2878
8VRL|1|A|G|2879
8VRL|1|A|U|2880
8VRL|1|A|A|2881
8VRL|1|A|C|2882
*
8VRL|1|A|G|2887
8VRL|1|A|G|2888
8VRL|1|A|A|2889
8VRL|1|A|C|2890
8VRL|1|A|C|2891
8VRL|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6