IL_8VRL_120

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

8VRL|1|A|C|3088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_120 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.2308

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8VRL|1|A|U|3068
8VRL|1|A|G|3069
8VRL|1|A|G|3070
8VRL|1|A|A|3071
8VRL|1|A|A|3072
8VRL|1|A|G|3073
*
8VRL|1|A|U|3086
8VRL|1|A|G|3087
8VRL|1|A|C|3088
8VRL|1|A|A|3089
8VRL|1|A|G|3090

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19