IL_8VS9_005
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 8VS9|1|16S|A|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_005 not in the Motif Atlas
- Geometric match to IL_4V88_426
- Geometric discrepancy: 0.2427
- The information below is about IL_4V88_426
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8VS9|1|16S|C|63
8VS9|1|16S|G|64
8VS9|1|16S|A|65
8VS9|1|16S|A|66
8VS9|1|16S|C|67
*
8VS9|1|16S|G|102
8VS9|1|16S|U|103
8VS9|1|16S|G|104
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S20
- 30S ribosomal protein S20
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