3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_018 not in the Motif Atlas
Homologous match to IL_4LFB_012
Geometric discrepancy: 0.2657
The information below is about IL_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47074.2
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8VS9|1|16S|U|249
8VS9|1|16S|A|250
8VS9|1|16S|G|251
8VS9|1|16S|U|252
*
8VS9|1|16S|A|274
8VS9|1|16S|G|275

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S17
Small ribosomal subunit protein uS17

Coloring options:


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