IL_8VS9_036

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_036 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.2157

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8VS9|1|16S|U|594
8VS9|1|16S|A|595
8VS9|1|16S|A|596
*
8VS9|1|16S|U|644
8VS9|1|16S|G|645

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S08

30S ribosomal protein S8

Chain S17

Small ribosomal subunit protein uS17