IL_8VS9_040

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_040 not in the Motif Atlas

Homologous match to IL_5J7L_031

Geometric discrepancy: 0.1564

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8VS9|1|16S|G|654
8VS9|1|16S|A|655
*
8VS9|1|16S|U|751
8VS9|1|16S|G|752
8VS9|1|16S|A|753
8VS9|1|16S|C|754

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S08

30S ribosomal protein S8

Chain S15

Small ribosomal subunit protein uS15