IL_8VS9_055

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VS9|1|16S|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|16S|G|1003
8VS9|1|16S|A|1004
8VS9|1|16S|A|1005
8VS9|1|16S|G|1006
*
8VS9|1|16S|U|1023
8VS9|1|16S|G|1024
8VS9|1|16S|U|1025
8VS9|1|16S|G|1026
8VS9|1|16S|C|1027
8VS9|1|16S|C|1028
8VS9|1|16S|U|1029
8VS9|1|16S|U|1030
8VS9|1|16S|C|1031
8VS9|1|16S|G|1032
8VS9|1|16S|G|1033
8VS9|1|16S|G|1034
8VS9|1|16S|A|1035
8VS9|1|16S|A|1036
8VS9|1|16S|C|1037

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

Small ribosomal subunit protein uS14