IL_8VS9_059
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 8VS9|1|16S|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_059 not in the Motif Atlas
- Homologous match to IL_5J7L_049
- Geometric discrepancy: 0.1641
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
8VS9|1|16S|U|1060
8VS9|1|16S|G|1061
*
8VS9|1|16S|C|1195
8VS9|1|16S|A|1196
8VS9|1|16S|A|1197
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain ATRN
- Transfer RNA; tRNA
- Chain S03
- 30S ribosomal protein S3
- Chain S05
- 30S ribosomal protein S5
- Chain S10
- 30S ribosomal protein S10
- Chain S14
- Small ribosomal subunit protein uS14
- Chain TMRN
- Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA
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