IL_8VS9_061

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUUG*CAAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCUUUG,CAAAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_061 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3746

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8VS9|1|16S|C|1119
8VS9|1|16S|C|1120
8VS9|1|16S|U|1121
8VS9|1|16S|U|1122
8VS9|1|16S|U|1123
8VS9|1|16S|G|1124
*
8VS9|1|16S|C|1149
8VS9|1|16S|A|1150
8VS9|1|16S|A|1151
8VS9|1|16S|A|1152
8VS9|1|16S|G|1153
8VS9|1|16S|G|1154

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

Small ribosomal subunit protein uS9

Chain S10

30S ribosomal protein S10