IL_8VS9_081

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

8VS9|1|23S|U|100, 8VS9|1|23S|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_081 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.2054

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8VS9|1|23S|G|81
8VS9|1|23S|U|82
8VS9|1|23S|A|83
8VS9|1|23S|A|84
8VS9|1|23S|G|85
*
8VS9|1|23S|C|97
8VS9|1|23S|G|98
8VS9|1|23S|U|99
8VS9|1|23S|U|100
8VS9|1|23S|A|101
8VS9|1|23S|U|102
8VS9|1|23S|A|103
8VS9|1|23S|A|104
8VS9|1|23S|C|105

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L24

50S ribosomal protein L24

Chain L29

50S ribosomal protein L29