3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
8VS9|1|23S|U|276
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_086 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.4114
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

8VS9|1|23S|C|274
8VS9|1|23S|C|275
8VS9|1|23S|U|276
8VS9|1|23S|G|277
8VS9|1|23S|A|278
8VS9|1|23S|A|279
8VS9|1|23S|U|280
8VS9|1|23S|C|281
*
8VS9|1|23S|G|359
8VS9|1|23S|U|360
8VS9|1|23S|G|361
8VS9|1|23S|A|362
8VS9|1|23S|G|363

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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