IL_8VS9_086
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUGAAUC*GUGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VS9|1|23S|U|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_086 not in the Motif Atlas
- Homologous match to IL_5J7L_253
- Geometric discrepancy: 0.4114
- The information below is about IL_5J7L_253
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77870.1
- Basepair signature
- cWW-L-R-L-tHS-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VS9|1|23S|C|274
8VS9|1|23S|C|275
8VS9|1|23S|U|276
8VS9|1|23S|G|277
8VS9|1|23S|A|278
8VS9|1|23S|A|279
8VS9|1|23S|U|280
8VS9|1|23S|C|281
*
8VS9|1|23S|G|359
8VS9|1|23S|U|360
8VS9|1|23S|G|361
8VS9|1|23S|A|362
8VS9|1|23S|G|363
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: