3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
8VS9|1|23S|A|764
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VS9_095 not in the Motif Atlas
Homologous match to IL_5J7L_261
Geometric discrepancy: 0.1596
The information below is about IL_5J7L_261
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

8VS9|1|23S|G|697
8VS9|1|23S|C|698
*
8VS9|1|23S|G|763
8VS9|1|23S|A|764
8VS9|1|23S|C|765

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L02
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.07 s