IL_8VS9_108

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_108 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.268

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VS9|1|23S|G|875
8VS9|1|23S|C|876
8VS9|1|23S|A|877
8VS9|1|23S|A|878
8VS9|1|23S|G|879
*
8VS9|1|23S|C|898
8VS9|1|23S|A|899
8VS9|1|23S|A|900
8VS9|1|23S|C|901
8VS9|1|23S|C|902

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain L16

50S ribosomal protein L16