IL_8VS9_115
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8VS9|1|23S|A|1127, 8VS9|1|23S|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_115 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.117
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|23S|G|1024
8VS9|1|23S|G|1025
8VS9|1|23S|G|1026
8VS9|1|23S|A|1027
8VS9|1|23S|A|1028
8VS9|1|23S|A|1029
8VS9|1|23S|C|1030
*
8VS9|1|23S|G|1124
8VS9|1|23S|G|1125
8VS9|1|23S|A|1126
8VS9|1|23S|A|1127
8VS9|1|23S|G|1128
8VS9|1|23S|A|1129
8VS9|1|23S|U|1130
8VS9|1|23S|G|1131
8VS9|1|23S|U|1132
8VS9|1|23S|A|1133
8VS9|1|23S|A|1134
8VS9|1|23S|C|1135
8VS9|1|23S|G|1136
8VS9|1|23S|G|1137
8VS9|1|23S|G|1138
8VS9|1|23S|G|1139
8VS9|1|23S|C|1140
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L13
- 50S ribosomal protein L13
- Chain L16
- 50S ribosomal protein L16
- Chain L36
- 50S ribosomal protein L36
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