IL_8VS9_116

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VS9|1|23S|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_116 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1497

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8VS9|1|23S|G|1031
8VS9|1|23S|A|1032
8VS9|1|23S|U|1033
8VS9|1|23S|G|1034
*
8VS9|1|23S|C|1121
8VS9|1|23S|G|1122
8VS9|1|23S|C|1123

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L16

50S ribosomal protein L16

Chain L36

50S ribosomal protein L36