IL_8VS9_124

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_124 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1454

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8VS9|1|23S|A|1262
8VS9|1|23S|U|1263
8VS9|1|23S|A|1264
8VS9|1|23S|A|1265
8VS9|1|23S|G|1266
8VS9|1|23S|U|1267
8VS9|1|23S|A|1268
8VS9|1|23S|A|1269
*
8VS9|1|23S|U|2011
8VS9|1|23S|G|2012
8VS9|1|23S|A|2013
8VS9|1|23S|A|2014
8VS9|1|23S|A|2015
8VS9|1|23S|U|2016
8VS9|1|23S|U|2017

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L22

50S ribosomal protein L22

Chain L32

50S ribosomal protein L32