IL_8VS9_130

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8VS9|1|23S|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_130 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1631

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8VS9|1|23S|C|1417
8VS9|1|23S|G|1418
8VS9|1|23S|A|1419
8VS9|1|23S|A|1420
8VS9|1|23S|G|1421
*
8VS9|1|23S|C|1577
8VS9|1|23S|U|1578
8VS9|1|23S|A|1579
8VS9|1|23S|A|1580
8VS9|1|23S|G|1581

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains