IL_8VS9_134

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

8VS9|1|23S|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_134 not in the Motif Atlas

Geometric match to IL_3BNN_006

Geometric discrepancy: 0.3384

The information below is about IL_3BNN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8VS9|1|23S|U|1468
8VS9|1|23S|A|1469
8VS9|1|23S|A|1470
8VS9|1|23S|G|1471
8VS9|1|23S|C|1472
*
8VS9|1|23S|G|1519
8VS9|1|23S|U|1520
8VS9|1|23S|G|1521
8VS9|1|23S|A|1522
8VS9|1|23S|U|1523
8VS9|1|23S|G|1524

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains