IL_8VS9_144

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8VS9|1|23S|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_144 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1191

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|C|1686
8VS9|1|23S|G|1687
8VS9|1|23S|U|1688
8VS9|1|23S|A|1689
8VS9|1|23S|A|1690
8VS9|1|23S|C|1691
*
8VS9|1|23S|G|1696
8VS9|1|23S|G|1697
8VS9|1|23S|A|1698
8VS9|1|23S|G|1699
8VS9|1|23S|A|1700
8VS9|1|23S|A|1701
8VS9|1|23S|G|1702

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2