IL_8VS9_153

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_153 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.2088

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|U|1864
8VS9|1|23S|U|1865
8VS9|1|23S|A|1866
8VS9|1|23S|G|1867
*
8VS9|1|23S|C|1874
8VS9|1|23S|G|1875
8VS9|1|23S|A|1876
8VS9|1|23S|A|1877
8VS9|1|23S|G|1878

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1