IL_8VS9_156

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8VS9|1|23S|A|1938, 8VS9|1|23S|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VS9_156 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.2232

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8VS9|1|23S|C|1934
8VS9|1|23S|G|1935
8VS9|1|23S|A|1936
8VS9|1|23S|A|1937
8VS9|1|23S|A|1938
8VS9|1|23S|U|1939
8VS9|1|23S|U|1940
8VS9|1|23S|C|1941
8VS9|1|23S|C|1942
8VS9|1|23S|U|1943
8VS9|1|23S|U|1944
8VS9|1|23S|G|1945
*
8VS9|1|23S|C|1961
8VS9|1|23S|C|1962
8VS9|1|23S|U|1963
8VS9|1|23S|G|1964

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain ATRN

Transfer RNA; tRNA