IL_8VS9_157
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAA*UG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VS9_157 not in the Motif Atlas
- Homologous match to IL_5J7L_320
- Geometric discrepancy: 0.0767
- The information below is about IL_5J7L_320
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.6
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
8VS9|1|23S|C|2050
8VS9|1|23S|A|2051
8VS9|1|23S|A|2052
*
8VS9|1|23S|U|2617
8VS9|1|23S|G|2618
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L03
- 50S ribosomal protein L3
- Chain L32
- 50S ribosomal protein L32
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